DocumentCode
1652702
Title
Marfan Syndrome Exon CpG Percentage and Fractal Dimension
Author
Holden, Todd ; Tremberger, G., Jr. ; Cheung, E. ; Subramaniam, R. ; Sullivan, R. ; Schneider, P. ; Flamholz, A. ; Lieberman, D. ; Cheung, T.
Author_Institution
Phys. Depts., CUNY Queensborogh Community Coll., Bayside, NY
fYear
2008
Firstpage
482
Lastpage
485
Abstract
The CpG di-nucleotide percentage and exon fractal dimension fluctuation were investigated with respect to the recently identified Marfan syndrome exons in the FBN1 gene. The CpG di-nucleotide percentage was found to rank high in exon 1 (9%), exon 44 (6.5%), exon 24 (5.3%) and exon 27 (4.8%). The most significant Marfan exon group was reported to be exon 24- 32. An exon nucleotide sequence can be expressed as a numerical sequence when each nucleotide is assigned its proton number. The resulting exon nucleotide numerical sequence could be investigated for its fractal dimension. The fractal dimension exhibited fluctuation across the 65 FBN1 exons and the values formed a Gaussian-like distribution (N = 65). The moving average fractal dimension was found to exhibit a broad peak around exons 24 to 32, consistent with the reported Marfan syndrome exon group.
Keywords
fractals; genetics; molecular biophysics; proteins; FBN1 gene; Marfan syndrome exon; dinucleotide percentage; exon fractal dimension; exon nucleotide sequence; Calibration; Fluctuations; Fractals; Gaussian distribution; Genetic mutations; Humans; Proteins; Protons; RNA; Sequences;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedical Engineering, 2008. ICBBE 2008. The 2nd International Conference on
Conference_Location
Shanghai
Print_ISBN
978-1-4244-1747-6
Electronic_ISBN
978-1-4244-1748-3
Type
conf
DOI
10.1109/ICBBE.2008.117
Filename
4534997
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