• DocumentCode
    1681778
  • Title

    Inference of Poisson count processes using low-rank tensor data

  • Author

    Bazerque, Juan Andres ; Mateos, Gonzalo ; Giannakis, Georgios

  • Author_Institution
    Dept. of ECE & DTC, Univ. of Minnesota, Minneapolis, MN, USA
  • fYear
    2013
  • Firstpage
    5989
  • Lastpage
    5993
  • Abstract
    A novel regularizer capturing the tensor rank is introduced in this paper as the key enabler for completion of three-way data arrays with missing entries. The novel regularized imputation approach induces sparsity in the factors of the tensor´s PARAFAC decomposition, thus reducing its rank. The focus is on count processes which emerge in diverse applications ranging from genomics to computer and social networking. Based on Poisson count data, a maximum aposteriori (MAP) estimator is developed using the Kullback-Leibler divergence criterion. This probabilistic approach also facilitates incorporation of correlated priors regularizing the rank, while endowing the tensor imputation method with extra smoothing and prediction capabilities. Tests on simulated and real datasets corroborate the sparsifying regularization effect, and demonstrate recovery of 15% missing RNA-sequencing data with an inference error of -12dB.
  • Keywords
    biology computing; genomics; inference mechanisms; stochastic processes; tensors; Kullback-Leibler divergence criterion; MAP estimator; Poisson count data; RNA sequencing data; data arrays; genomics; inference error; low rank tensor data; maximum aposteriori estimator; poisson count processes; probabilistic approach; real datasets corroborate; regularization effect; regularized imputation; regularizer; social networking; sparsity; tensor PARAFAC decomposition; tensor imputation; tensor rank; Bioinformatics; Data models; Matrix decomposition; Minimization; RNA; Sparse matrices; Tensile stress; Poisson processes; Tensor; low-rank; missing data;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Acoustics, Speech and Signal Processing (ICASSP), 2013 IEEE International Conference on
  • Conference_Location
    Vancouver, BC
  • ISSN
    1520-6149
  • Type

    conf

  • DOI
    10.1109/ICASSP.2013.6638814
  • Filename
    6638814