• DocumentCode
    1683085
  • Title

    Subspace-based estimation of symbolic periodicities

  • Author

    Sward, Johan ; Jakobsson, Andreas

  • Author_Institution
    Dept. of Math. Stat., Lund Univ., Lund, Sweden
  • fYear
    2013
  • Firstpage
    6210
  • Lastpage
    6214
  • Abstract
    In this work, we propose a novel subspace-based estimator of periodicities in symbolic sequences. The estimator exploits the harmonic structure naturally occurring in symbolic sequences and iteratively forms the estimate of the periodicities using a MUSIC-like formulation. The estimator allows for alphabets of different sizes, but is here illustrated using both simulated and real DNA measurements, showing a notable performance gain as compared to other common estimators.
  • Keywords
    DNA; estimation theory; genomics; DNA measurements; MUSIC-like formulation; harmonic structure; subspace-based estimation; symbolic periodicities; symbolic sequences; Bioinformatics; Correlation; DNA; Estimation; Genomics; Harmonic analysis; Vectors; Spectrum analysis; hidden periodicities; subspace techniques; symbolic sequences;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Acoustics, Speech and Signal Processing (ICASSP), 2013 IEEE International Conference on
  • Conference_Location
    Vancouver, BC
  • ISSN
    1520-6149
  • Type

    conf

  • DOI
    10.1109/ICASSP.2013.6638859
  • Filename
    6638859