Title :
Early detection of cancer by regression analysis and computer simulation of gene regulatory rules
Author :
Nguyen, Danh Cong ; Azadivar, Farhad
Author_Institution :
Dept. of Mech. Eng., Univ. of Massachusetts, Dartmouth, MA, USA
Abstract :
Cellular signaling and dynamic interaction among genes result in stable phenotype structures such as tumor or non tumor cells. Tumor and non-tumor cellular cells often contain some identical cancer causing genes but due to differences in their regulatory networks they evolve differently. As a result, if such regulatory networks are discovered one could predict whether a cell containing particular cancer genes will in fact end up to become a cancerous cell. This paper utilizes a mathematical approach to determine such regulatory rules for a set of cells containing cancer causing genes and uses computer simulation to predict whether in a long run a particular cell will evolve into a cancerous cell. The proposed process utilizes Probabilistic Boolean Networks (PBN) on two gene regulatory networks; one for tumor and one for non-tumor producing structures. The process uses a regression analysis to identify the regulatory networks and a computer simulation model to predict long term cancer potential.
Keywords :
biology computing; cancer; cellular biophysics; complex networks; genetics; medical computing; molecular biophysics; physiological models; probability; regression analysis; tumours; PBN; cancer causing genes; cancerous cell; cellular signaling; computer simulation; dynamic gene interaction; early cancer detection; gene regulatory networks; gene regulatory rules; long term cancer potential prediction; nontumor cells; probabilistic boolean networks; regression analysis; stable phenotype structures; tumor cells; Cancer; Computational modeling; Computer simulation; Data models; Probabilistic logic; Steady-state; Tumors; Cancer; Computer Simulation; Genetic Regulatory Network; Microarray Data; Probabilistic Boolean Network;
Conference_Titel :
Biomedical Engineering (ICoBE), 2012 International Conference on
Conference_Location :
Penang
Print_ISBN :
978-1-4577-1990-5
DOI :
10.1109/ICoBE.2012.6178972