DocumentCode
169694
Title
Gene Function Prediction Using Improved Fuzzy c-Means Algorithm
Author
Kasim, Shahreen ; Md Fudzee, Mohd Farhan ; Deris, Safaai ; Othman, Razib M.
Author_Institution
Software & Multimedia Center, Univ. Tun Hussein Onn Malaysia, Batu Pahat, Malaysia
fYear
2014
fDate
6-9 May 2014
Firstpage
1
Lastpage
4
Abstract
Currently, there are many new discoveries of gene expression analysis. In order to analyze the gene expression data, fuzzy clustering algorithms are widely used. However, common clustering algorithms do not provide a comprehensive approach that look into the three categories of annotations; biological process, molecular function, and cellular component, and were not tested with different functional annotation database formats. Furthermore, the common clustering algorithms do not provide the information of dominant gene among the clusters. In this paper, we present a new computational framework for clustering gene expression data. From this experiment, we can conclude that our framework capable of determining the dominant gene and also predict the unknown genes.
Keywords
bioinformatics; data analysis; fuzzy set theory; genetics; pattern clustering; annotation category; biological process; cellular component; functional annotation database formats; fuzzy c-means algorithm; fuzzy clustering algorithms; gene expression data analysis; gene expression data clustering; gene function prediction; molecular function; Algorithm design and analysis; Bioinformatics; Clustering algorithms; Databases; Gene expression; Prediction algorithms;
fLanguage
English
Publisher
ieee
Conference_Titel
Information Science and Applications (ICISA), 2014 International Conference on
Conference_Location
Seoul
Print_ISBN
978-1-4799-4443-9
Type
conf
DOI
10.1109/ICISA.2014.6847405
Filename
6847405
Link To Document