• DocumentCode
    169694
  • Title

    Gene Function Prediction Using Improved Fuzzy c-Means Algorithm

  • Author

    Kasim, Shahreen ; Md Fudzee, Mohd Farhan ; Deris, Safaai ; Othman, Razib M.

  • Author_Institution
    Software & Multimedia Center, Univ. Tun Hussein Onn Malaysia, Batu Pahat, Malaysia
  • fYear
    2014
  • fDate
    6-9 May 2014
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    Currently, there are many new discoveries of gene expression analysis. In order to analyze the gene expression data, fuzzy clustering algorithms are widely used. However, common clustering algorithms do not provide a comprehensive approach that look into the three categories of annotations; biological process, molecular function, and cellular component, and were not tested with different functional annotation database formats. Furthermore, the common clustering algorithms do not provide the information of dominant gene among the clusters. In this paper, we present a new computational framework for clustering gene expression data. From this experiment, we can conclude that our framework capable of determining the dominant gene and also predict the unknown genes.
  • Keywords
    bioinformatics; data analysis; fuzzy set theory; genetics; pattern clustering; annotation category; biological process; cellular component; functional annotation database formats; fuzzy c-means algorithm; fuzzy clustering algorithms; gene expression data analysis; gene expression data clustering; gene function prediction; molecular function; Algorithm design and analysis; Bioinformatics; Clustering algorithms; Databases; Gene expression; Prediction algorithms;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Information Science and Applications (ICISA), 2014 International Conference on
  • Conference_Location
    Seoul
  • Print_ISBN
    978-1-4799-4443-9
  • Type

    conf

  • DOI
    10.1109/ICISA.2014.6847405
  • Filename
    6847405