Title :
Estimating the thickness of ultra thin sections for electron microscopy by image statistics
Author :
Sporring, Jon ; Khanmohammadi, Mahdieh ; Darkner, Sune ; Nava, Nicoletta ; Nyengaard, Jens Rondel ; Jensen, Eva Bjorn Wedel
Author_Institution :
Dept. of Comput. Sci., Univ. Of Copenhagen, Copenhagen, Denmark
fDate :
April 29 2014-May 2 2014
Abstract :
We propose a method for estimating the thickness of ultra thin histological sections by image statistics alone. Our method works for images, that are realisations of a stationary and isotropic stochastic process, and it relies on the existence of statistical image-measures that are strictly monotonic with distance. We propose to use the standard deviation of the difference between pixel values as a function of distance, and give an extremely simple, linear algorithm. Our algorithm is applied to the challenging domain of electron microscopic sections supposedly 45 nm apart, and we show that these images with high certainty belong to the required statistical class, and that the reconstructions are valid.
Keywords :
biological techniques; biological tissues; biology computing; electron microscopy; image reconstruction; statistics; stochastic processes; distance 45 nm; distance function; electron microscopic sections; electron microscopy; image reconstructions; image statistics; isotropic stochastic process; linear algorithm; pixel values; standard deviation; stationary stochastic process; statistical class; statistical image-measures; ultrathin histological section thickness; Estimation; Image reconstruction; Standards; Thickness measurement; Transmission electron microscopy;
Conference_Titel :
Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on
Conference_Location :
Beijing
DOI :
10.1109/ISBI.2014.6867833