Title :
Research on preprocessing of DNase signal in DNAprotein binding sites detection
Author :
Deyuan Lian ; Bo He ; Fengfei Song ; Meng Li ; Weixing Feng
Author_Institution :
Coll. of Autom., Harbin Eng. Univ., Harbin, China
Abstract :
There are many functional proteins in human cells, which bind in genes and regulate their expression. Accurately identifying binding sites of these proteins is an important and difficult job in life science. To solve this problem, a new DNA protein binding site detection technology, named DNase-Seq emerges. DNase-Seq has great advantages, but its detection signal is quite complex, which makes accurately identifying DNA protein binding site a challenging task. We in-depth analyze DNase-Seq signals and propose a novel preprocessing method. The corresponding experiment proves validity of the method.
Keywords :
DNA; cellular biophysics; molecular biophysics; proteins; DNA-protein binding sites detection; DNase signal preprocessing; DNase-Seq; gene expression; human cells; Bioinformatics; DNA; Educational institutions; Genomics; In vivo; Proteins; Sequential analysis; DNA; DNase-Seq; binding sites; functional protein;
Conference_Titel :
Mechatronics and Automation (ICMA), 2014 IEEE International Conference on
Conference_Location :
Tianjin
Print_ISBN :
978-1-4799-3978-7
DOI :
10.1109/ICMA.2014.6885942