Title :
Localization of gene expression regions in Drosophila embryonic images
Author :
Qi Li ; Silveira, Wagner ; Yongyi Gong
Author_Institution :
Dept. of Comput. Sci., Western Kentucky Univ., Bowling Green, KY, USA
Abstract :
Automatic localization of gene expression regions in Drosophila embryonic images is an important step in a computational system for the discovery of patterns of gene-gene interaction. In this paper, we propose a thresholding framework that selects an optimal threshold via a consistency criterion on good candidate thresholds provided by multiple response functions, including intensity histograms. In experiments, we test the proposed framework, being compared with four well-known methods, on images in Berkley Drosophila Genome Project (BDGP) dataset, and obtain promising results.
Keywords :
biology computing; genomics; image segmentation; BDGP dataset; Berkley Drosophila Genome Project dataset; Drosophila embryonic images; automatic localization; computational system; consistency criterion; gene expression regions; gene-gene interaction; intensity histograms; thresholding framework; Bioinformatics; Computed tomography; Educational institutions; Embryo; Gene expression; Histograms; Kernel; Drosophila embryo; connected component; gene expression region; interest region; thresholding;
Conference_Titel :
Signal and Information Processing (ChinaSIP), 2014 IEEE China Summit & International Conference on
Conference_Location :
Xi´an
Print_ISBN :
978-1-4799-5401-8
DOI :
10.1109/ChinaSIP.2014.6889300