DocumentCode :
1816388
Title :
Streamlined formulation of adaptive explicit-implicit tau-leaping with automatic tau selection
Author :
Sandmann, Werner
Author_Institution :
Dept. of Math., Clausthal Univ. of Technol., Clausthal-Zellerfeld, Germany
fYear :
2009
fDate :
13-16 Dec. 2009
Firstpage :
1104
Lastpage :
1112
Abstract :
The adaptive explicit-implicit tau-leaping method with automatic tau selection is a flexible algorithm for accelerated stochastic simulation of chemically reacting systems. It combines the advantages of different simulation schemes and is particularly useful when a system changes its dynamical behavior over time in the sense that it behaves well in some time periods but possesses stiffness in other time periods. However, the ingredients necessary to fully understand and implement the algorithm are spread over several papers, not always consistent in terminology and notation, which considerably hampers and possibly even prevents accessibility and widespread practical use. We present a streamlined description of the algorithm using a unified terminology and notation and introduce significantly simplified versions of two major ingredients, namely the step size selection and the switching mechanism between the sub-algorithms.
Keywords :
chemical reactions; reaction kinetics; stochastic processes; accelerated stochastic simulation; adaptive explicit-implicit tau-leaping; automatic tau selection; chemically reacting systems; flexible algorithm; step size selection; streamlined description; streamlined formulation; switching mechanism; unified terminology; Acceleration; Analytical models; Biological system modeling; Chemical technology; Equations; Kinetic theory; Mathematics; Stochastic processes; Stochastic systems; Terminology;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Simulation Conference (WSC), Proceedings of the 2009 Winter
Conference_Location :
Austin, TX
Print_ISBN :
978-1-4244-5770-0
Type :
conf
DOI :
10.1109/WSC.2009.5429309
Filename :
5429309
Link To Document :
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