Title :
SigMate: A comprehensive software package for extracellular neuronal signal processing and analysis
Author :
Mahmud, M. ; Bertoldo, A. ; Girardi, S. ; Maschietto, M. ; Pasqualotto, E. ; Vassanelli, S.
Author_Institution :
Dept. of Human Anatomy & Physiol., Univ. of Padova, Padova, Italy
fDate :
April 27 2011-May 1 2011
Abstract :
This paper presents a comprehensive neuronal signal analysis and processing tool, `SigMate´, developed in Matlab, incorporating the available standard tools and our in-house custom tools. The present features include, data visualization (2D and 3D), slow stimulus artifact removal (including baseline correction), noise characterization, file operations (file splitting, concatenation, and column rearranging), latency estimation in local field potentials (LFPs), current source density (CSD) analysis, determination of cortical layer activation order (CLAO) from LFPs and CSDs, spike detection, spike sorting, single sweep LFP sorting, EEG based brain-machine interfacing (BMI), neuronal simulation environment, and are gradually growing. This tool has been extensively tested using signals recorded by the standard electrodes as well as implantable EOSFETs (Electrolyte-Oxide-Semiconductor Field Effect Transistors) based multisite neural probes and will be made available to the community shortly.
Keywords :
bioelectric potentials; biomedical electrodes; brain-computer interfaces; data visualisation; electroencephalography; field effect transistors; mathematics computing; medical signal detection; medical signal processing; neurophysiology; noise; EEG based brain-machine interfacing; Matlab; SigMate; baseline correction; column rearranging; comprehensive software package; concatenation; cortical layer activation order; current source density analysis; data visualization; electrodes; electrolyte-oxide-semiconductor field effect transistors; extracellular neuronal signal processing; file operations; file splitting; implantable EOSFET; latency estimation; local field potentials; multisite neural probes; neuronal simulation environment; noise characterization; processing tool; single sweep LFP sorting; spike detection; spike sorting; stimulus artifact removal; Brain modeling; Electroencephalography; Estimation; Noise; Software packages; Sorting; Neuronal signal analysis; Neuronal signal processing; local field potentials; neuronal activity; signal analysis software;
Conference_Titel :
Neural Engineering (NER), 2011 5th International IEEE/EMBS Conference on
Conference_Location :
Cancun
Print_ISBN :
978-1-4244-4140-2
DOI :
10.1109/NER.2011.5910495