Title :
Automatic summarization of changes in image sequences using algorithmic information theory
Author :
Cohen, Andrew R. ; Bjornsson, Christopher ; Chen, Ying ; Banker, Gary ; Ladi, Ena ; Robey, Ellen ; Temple, Sally ; Roysam, Badrinath
Author_Institution :
Rensselaer Polytech. Inst., Troy, NY
Abstract :
An algorithmic information theoretic method is presented for object-level summarization of meaningful changes in image sequences. Object extraction and tracking data are represented as an attributed tracking graph (ATG), whose connected subgraphs are compared using an adaptive information distance measure, aided by a closed-form multi-dimensional quantization. The summary is the clustering result and feature subset that maximize the gap statistic. The notion of meaningful summarization is captured by using the gap statistic to estimate the randomness deficiency from algorithmic statistics. When applied to movies of cultured neural progenitor cells, it correctly distinguished neurons from progenitors without requiring the use of a fixative stain. When analyzing intra-cellular molecular transport in cultured neurons undergoing axon specification, it automatically confirmed the role of kinesins in axon specification. Finally, it was able to differentiate wild type from genetically modified thymocyte cells.
Keywords :
biological techniques; cellular biophysics; feature extraction; image processing; information theory; neurophysiology; statistical analysis; ATG; adaptive information distance measure; algorithmic information theory; algorithmic statistics; attributed tracking graph; axon specification; closed form multidimensional quantization; connected subgraphs; cultured neural progenitor cells; gap statistic; genetically modified thymocyte cells; image sequence changes; intracellular molecular transport; neurons; object extraction; object level summarization; progenitors; tracking data; Clustering algorithms; Data mining; Genetic communication; Image sequences; Information theory; Motion pictures; Nerve fibers; Neurons; Quantization; Statistics; Algorithmic information theory; Algorithmic statistics; Clustering; Gap statistic; Information distance;
Conference_Titel :
Biomedical Imaging: From Nano to Macro, 2008. ISBI 2008. 5th IEEE International Symposium on
Conference_Location :
Paris
Print_ISBN :
978-1-4244-2002-5
Electronic_ISBN :
978-1-4244-2003-2
DOI :
10.1109/ISBI.2008.4541132