DocumentCode
1900661
Title
Detection of Pathogenic Mutation Prone Locations from Protein Sequences using Solvent Accessibility Measurements
Author
Ahdesmäki, Miika ; Thusberg, Janita ; Huttunen, Heikki ; Vihinen, Mauno ; Yli-Harja, Olli
Author_Institution
Tampere Univ. of Technol., Tampere
fYear
2007
fDate
10-12 June 2007
Firstpage
1
Lastpage
4
Abstract
This paper presents a simple way of predicting locations in protein sequences that are prone to disease-causing mutations. These locations are found with the help of outlier analysis of recurrence quantification analysis (RQA) applied to protein solvent accessibility measurements. The detected locations are related to the deterministic patterns of the protein sequences. These deterministic patterns may be related to binding and folding and thus changes in these locations can cause disease by altering the structural and/or functional properties of the protein.
Keywords
diseases; genetic engineering; genetics; proteins; deterministic patterns; disease-causing mutations; functional properties; pathogenic mutation prone locations; protein sequences; protein solvent accessibility measurements; recurrence quantification analysis; solvent accessibility measurements; Amino acids; Diseases; Genetic mutations; Hospitals; Humans; Pathogens; Protein engineering; Robustness; Signal processing; Solvents;
fLanguage
English
Publisher
ieee
Conference_Titel
Genomic Signal Processing and Statistics, 2007. GENSIPS 2007. IEEE International Workshop on
Conference_Location
Tuusula
Print_ISBN
978-1-4244-0998-3
Electronic_ISBN
978-1-4244-0999-0
Type
conf
DOI
10.1109/GENSIPS.2007.4365845
Filename
4365845
Link To Document