• DocumentCode
    1900661
  • Title

    Detection of Pathogenic Mutation Prone Locations from Protein Sequences using Solvent Accessibility Measurements

  • Author

    Ahdesmäki, Miika ; Thusberg, Janita ; Huttunen, Heikki ; Vihinen, Mauno ; Yli-Harja, Olli

  • Author_Institution
    Tampere Univ. of Technol., Tampere
  • fYear
    2007
  • fDate
    10-12 June 2007
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    This paper presents a simple way of predicting locations in protein sequences that are prone to disease-causing mutations. These locations are found with the help of outlier analysis of recurrence quantification analysis (RQA) applied to protein solvent accessibility measurements. The detected locations are related to the deterministic patterns of the protein sequences. These deterministic patterns may be related to binding and folding and thus changes in these locations can cause disease by altering the structural and/or functional properties of the protein.
  • Keywords
    diseases; genetic engineering; genetics; proteins; deterministic patterns; disease-causing mutations; functional properties; pathogenic mutation prone locations; protein sequences; protein solvent accessibility measurements; recurrence quantification analysis; solvent accessibility measurements; Amino acids; Diseases; Genetic mutations; Hospitals; Humans; Pathogens; Protein engineering; Robustness; Signal processing; Solvents;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Genomic Signal Processing and Statistics, 2007. GENSIPS 2007. IEEE International Workshop on
  • Conference_Location
    Tuusula
  • Print_ISBN
    978-1-4244-0998-3
  • Electronic_ISBN
    978-1-4244-0999-0
  • Type

    conf

  • DOI
    10.1109/GENSIPS.2007.4365845
  • Filename
    4365845