Title :
New Distance Measure for Microarray Gene Expressions Using Linear Dynamic Range of Photo Multiplier Tube
Author :
Ray, Shubhra Sankar ; Bandyopadhyay, Sanghamitra ; Pal, Sankar K.
Author_Institution :
Center for Soft Comput. Res., Indian Stat. Inst., Calcutta
Abstract :
This paper deals with a new distance measure for genes using their microarray expressions. The distance measure is called, "maxrange distance ", where an experiment specific normalization factor is incorporated in the computation of the distance. The normalization factor is dependent on the linear dynamic range of the photo multiplier tube (PMT) for scanning fluorescence intensities of the gene expression values. Superiority of this distance measure in the microarray gene ordering problem has been extensively established on widely studied microarray data sets by performing statistical tests
Keywords :
biology computing; data analysis; genetics; pattern clustering; photomultipliers; statistical testing; fluorescence intensity scanning; maxrange distance measure; microarray gene expression; microarray gene ordering problem; photo multiplier tube linear dynamic range; statistical testing; Biology computing; DNA; Dynamic range; Fluorescence; Gene expression; Genomics; Machine intelligence; Particle measurements; Performance evaluation; Testing;
Conference_Titel :
Computing: Theory and Applications, 2007. ICCTA '07. International Conference on
Conference_Location :
Kolkata
Print_ISBN :
0-7695-2770-1
DOI :
10.1109/ICCTA.2007.92