DocumentCode :
1931562
Title :
Software tool for probabilistic metabolic pathways construction
Author :
Meitalovs, Jurijs
Author_Institution :
Fac. of Inf. Technol., Latvia Univ. of Agric., Jelgava, Latvia
fYear :
2012
fDate :
20-22 Nov. 2012
Firstpage :
405
Lastpage :
408
Abstract :
Computational automated methods for biochemical pathways constructions are becoming more popular each year. The availability of data of genomes and biochemical reactions allows usage of computers to build probabilistic metabolic routes from an initial compound to a product compound that can be implemented into a living organism. It can allow building novel pathways to reach necessary functionality and implement it into selected microorganism chassis like e.coli or yeast. In this paper we present a prototype of a software tool that can be used to predict possible minimal reactions list and its corresponded genes that should be implemented into chassis organism to achieve required functionality.
Keywords :
biochemistry; biology computing; genetic engineering; software engineering; software tools; biochemical pathways constructions; biochemical reactions; computational automated methods; e coli; genes; genomes; microorganism chassis; minimal reactions list; probabilistic metabolic pathways construction; probabilistic metabolic routes; software tool; yeast;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computational Intelligence and Informatics (CINTI), 2012 IEEE 13th International Symposium on
Conference_Location :
Budapest
Print_ISBN :
978-1-4673-5205-5
Electronic_ISBN :
978-1-4673-5210-9
Type :
conf
DOI :
10.1109/CINTI.2012.6496800
Filename :
6496800
Link To Document :
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