Title :
Mining Cellular Automata models on protein folding trajectories
Author :
Díaz, Néstor ; Tischer, Irene
Author_Institution :
Dept. de Sist., Univ. del Cauca, Popayan, Colombia
Abstract :
The present work consists in obtaining Cellular Automata models from simulation trajectories of protein folding, we describe the characteristics of the obtained models and discusses the advantages gained from the identification of rules based only on local interactions from a contact map representation. We detail experiments on the protein HP35 - NleNle which demonstrates the validity of the proposed approach.
Keywords :
biology computing; cellular automata; data mining; proteins; HP35-NleNle protein; cellular automata model; contact map representation; protein folding trajectory mining; Automata; Biological system modeling; Computational modeling; Load modeling; Proteins; Three dimensional displays; Trajectory; Cellular Automata; Contact Map; Data Mining; Protein Folding;
Conference_Titel :
Computing Congress (CCC), 2011 6th Colombian
Conference_Location :
Manizales
Print_ISBN :
978-1-4577-0285-3
DOI :
10.1109/COLOMCC.2011.5936322
