• DocumentCode
    1968390
  • Title

    Comparing bioinformatics software development by computer scientists and biologists: An exploratory study

  • Author

    Chilana, Parmit K. ; Palmer, Carole L. ; Ko, Andrew J.

  • Author_Institution
    DUB Group, Univ. of Washington, Seattle, WA
  • fYear
    2009
  • fDate
    23-23 May 2009
  • Firstpage
    72
  • Lastpage
    79
  • Abstract
    We present the results of a study designed to better understand information-seeking activities in bioinformatics software development by computer scientists and biologists. We collected data through semi-structured interviews with eight participants from four different bioinformatics labs in North America. The research focus within these labs ranged from computational biology to applied molecular biology and biochemistry. The findings indicate that colleagues play a significant role in information seeking activities, but there is need for better methods of capturing and retaining information from them during development. Also, in terms of online information sources, there is need for more centralization, improved access and organization of resources, and more consistency among formats. More broadly, the findings illustrate a variety of information problems that end-user biologists and professional software developers face in developing bioinformatics software and how they are influenced by the level of domain knowledge and technical expertise.
  • Keywords
    bioinformatics; software engineering; bioinformatics software development; computational biology; information-seeking activities; Biochemistry; Bioinformatics; Biological information theory; Biology computing; Computational biology; North America; Open source software; Programming; Sequences; Software tools;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Software Engineering for Computational Science and Engineering, 2009. SECSE '09. ICSE Workshop on
  • Conference_Location
    Vancouver, BC
  • Print_ISBN
    978-1-4244-3737-5
  • Type

    conf

  • DOI
    10.1109/SECSE.2009.5069165
  • Filename
    5069165