DocumentCode
1968390
Title
Comparing bioinformatics software development by computer scientists and biologists: An exploratory study
Author
Chilana, Parmit K. ; Palmer, Carole L. ; Ko, Andrew J.
Author_Institution
DUB Group, Univ. of Washington, Seattle, WA
fYear
2009
fDate
23-23 May 2009
Firstpage
72
Lastpage
79
Abstract
We present the results of a study designed to better understand information-seeking activities in bioinformatics software development by computer scientists and biologists. We collected data through semi-structured interviews with eight participants from four different bioinformatics labs in North America. The research focus within these labs ranged from computational biology to applied molecular biology and biochemistry. The findings indicate that colleagues play a significant role in information seeking activities, but there is need for better methods of capturing and retaining information from them during development. Also, in terms of online information sources, there is need for more centralization, improved access and organization of resources, and more consistency among formats. More broadly, the findings illustrate a variety of information problems that end-user biologists and professional software developers face in developing bioinformatics software and how they are influenced by the level of domain knowledge and technical expertise.
Keywords
bioinformatics; software engineering; bioinformatics software development; computational biology; information-seeking activities; Biochemistry; Bioinformatics; Biological information theory; Biology computing; Computational biology; North America; Open source software; Programming; Sequences; Software tools;
fLanguage
English
Publisher
ieee
Conference_Titel
Software Engineering for Computational Science and Engineering, 2009. SECSE '09. ICSE Workshop on
Conference_Location
Vancouver, BC
Print_ISBN
978-1-4244-3737-5
Type
conf
DOI
10.1109/SECSE.2009.5069165
Filename
5069165
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