DocumentCode
1973634
Title
Spatial organization of DNA: from the physical data to the 3D model
Author
Essabbah, M. ; Otmane, S. ; Mallem, M. ; Herisson, J.
Author_Institution
IBISC Lab., Univ. of Evry, Evry
fYear
2009
fDate
10-13 May 2009
Firstpage
880
Lastpage
883
Abstract
Behind its spatial organization, the DNA´s molecule conceals a rich functional reality. As a result, the study of the DNA´s organization is increasingly attracting scientists. However, researches conducted until now are either local, or global but based on approximations and predictions that make the obtained model less credible. On the other hand, further researches on chromosomes´ organization have identified some data and models representing, each one, a part of this organization. Our work aims to find a 3D repesentation that is global and more credible of the DNA´s molecule. The molecule will be represented at the chromatin fiber level by means of 3D modeling algorithms. Initially, we have identified the biophysical data to be exploited. Indeed, we will first rely on the biophysical data of the chromatin fiber´s structure as the persistence length along with the diameter, the confined volume and the curvature energy in order to build a first simple model of the chromatine.
Keywords
DNA; biology computing; data handling; 3D model; DNA molecule; biophysical data; chromatin fiber structure; spatial organization; Bioinformatics; Biological cells; Biological system modeling; Compaction; DNA; Error analysis; Laboratories; Predictive models; RNA; Stress; 3D model; Biophysical data; Chromatin fibre; Credible; Global;
fLanguage
English
Publisher
ieee
Conference_Titel
Computer Systems and Applications, 2009. AICCSA 2009. IEEE/ACS International Conference on
Conference_Location
Rabat
Print_ISBN
978-1-4244-3807-5
Electronic_ISBN
978-1-4244-3806-8
Type
conf
DOI
10.1109/AICCSA.2009.5069435
Filename
5069435
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