• DocumentCode
    1973634
  • Title

    Spatial organization of DNA: from the physical data to the 3D model

  • Author

    Essabbah, M. ; Otmane, S. ; Mallem, M. ; Herisson, J.

  • Author_Institution
    IBISC Lab., Univ. of Evry, Evry
  • fYear
    2009
  • fDate
    10-13 May 2009
  • Firstpage
    880
  • Lastpage
    883
  • Abstract
    Behind its spatial organization, the DNA´s molecule conceals a rich functional reality. As a result, the study of the DNA´s organization is increasingly attracting scientists. However, researches conducted until now are either local, or global but based on approximations and predictions that make the obtained model less credible. On the other hand, further researches on chromosomes´ organization have identified some data and models representing, each one, a part of this organization. Our work aims to find a 3D repesentation that is global and more credible of the DNA´s molecule. The molecule will be represented at the chromatin fiber level by means of 3D modeling algorithms. Initially, we have identified the biophysical data to be exploited. Indeed, we will first rely on the biophysical data of the chromatin fiber´s structure as the persistence length along with the diameter, the confined volume and the curvature energy in order to build a first simple model of the chromatine.
  • Keywords
    DNA; biology computing; data handling; 3D model; DNA molecule; biophysical data; chromatin fiber structure; spatial organization; Bioinformatics; Biological cells; Biological system modeling; Compaction; DNA; Error analysis; Laboratories; Predictive models; RNA; Stress; 3D model; Biophysical data; Chromatin fibre; Credible; Global;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computer Systems and Applications, 2009. AICCSA 2009. IEEE/ACS International Conference on
  • Conference_Location
    Rabat
  • Print_ISBN
    978-1-4244-3807-5
  • Electronic_ISBN
    978-1-4244-3806-8
  • Type

    conf

  • DOI
    10.1109/AICCSA.2009.5069435
  • Filename
    5069435