• DocumentCode
    1986757
  • Title

    Two operative concepts for the post-genomic era: the "memoire vive" of the cell and a molecular algebra

  • Author

    Bentolila, Simone

  • Author_Institution
    IGM, Univ. Marne la Vallee, France
  • fYear
    2003
  • fDate
    11-14 Aug. 2003
  • Firstpage
    114
  • Lastpage
    122
  • Abstract
    The first successes in cloning experiments and stem cell "reprogramming" have already demonstrated the primordial role of cellular working-space memory and regulatory mechanisms, which use the knowledge stored in the DNA database in read mode. We present an analogy between living systems and informatics systems by considering: 1) the cell cytoplasm as a memory device accessible as read/write; 2) the mechanisms of regulation as a programming language defined by a grammar, a molecular algebra; 3) biological processes as volatile programs which are executed without being written; 4) DNA as a database in read only mode. We also present applications to two biological algorithms: the immune response and glycogen metabolism.
  • Keywords
    biochemistry; biocomputing; biocybernetics; cellular biophysics; genetic algorithms; genetics; living systems; molecular biophysics; organic compounds; physiological models; DNA database; biological algorithms; biological processes; cell cytoplasm; cellular working-space memory primordial role; cloning experiments; glycogen metabolism; grammar; immune response; informatics systems; living systems; memoire vive; memory device; molecular algebra; post-genomic era; programming language; read mode; regulatory mechanisms; stem cell reprogramming; volatile programs; write mode; Algebra; Biological processes; Cells (biology); Cloning; Computer languages; DNA; Databases; Informatics; Read-write memory; Stem cells;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics Conference, 2003. CSB 2003. Proceedings of the 2003 IEEE
  • Print_ISBN
    0-7695-2000-6
  • Type

    conf

  • DOI
    10.1109/CSB.2003.1227310
  • Filename
    1227310