Graph Mining of Networks from Genome Biology

We are developing an advanced toolkit for biological networks, using problems from genome biology to drive this work. We now share our experiences in graph analysis and visualization of microbial genome networks using a collection of new and existing graph mining tools and techniques. We address three key problems in genome biology: the organization of complete genome protein networks, feature extraction across chromosomes in microbial strains, and hierarchical structure of protein families and superfamilies.