DocumentCode
2055060
Title
Deployment of a Regularized Feature Selection Framework on an Overlay Desktop Grid
Author
Barla, Annalisa ; Ferrante, Marco
Author_Institution
Dipt. di Inf. e Sci. dell´´Inf., Univ. degli Studi di Genova, Genova, Italy
fYear
2009
fDate
14-16 Oct. 2009
Firstpage
103
Lastpage
104
Abstract
We present an inexpensive solution to overcome the computational challenges of a state-of-the art feature selection framework. The algorithm relies on two nested loops of cross validation that allow the optimal choice for the regularization parameters resulting in a computationally expensive procedure. In order to speed up the process, we perform the loops on a desktop grid facility deployed on PCs in computer rooms as virtual machines connected through a VPN. The local grid shares resources with similar grids managed by other North Italian universities.
Keywords
biology computing; feature extraction; knowledge acquisition; molecular biophysics; virtual machines; virtual private networks; North Italian university; VPN; cross validation; local grid; overlay desktop grid; regularized feature selection; virtual machines; Concurrent computing; Data mining; Gene expression; Grid computing; High performance computing; Input variables; Least squares methods; Personal communication networks; Protocols; Resonance light scattering; desktop grid; regularization; variable selection;
fLanguage
English
Publisher
ieee
Conference_Titel
High Performance Computational Systems Biology, 2009. HIBI '09. International Workshop on
Conference_Location
Trento
Print_ISBN
978-0-7695-3809-9
Type
conf
DOI
10.1109/HiBi.2009.15
Filename
5298688
Link To Document