DocumentCode :
2075261
Title :
RN-Cluster: Discovering Coherent Biclusters Which is Robust to Noise
Author :
Ahn, Jaegyoon ; Yoon, Youngmi ; Park, Sanghyun
Author_Institution :
Comput. Sci. Dept., Yonsei Univ., Yonsei
fYear :
2008
fDate :
June 29 2008-July 5 2008
Firstpage :
131
Lastpage :
136
Abstract :
A bicluster is a subset of genes that show similar behavior within a subset of conditions. Biclustering algorithm is a useful tool to uncover groups of genes involved in the same cellular process and groups of conditions which take place in this process. We are proposing a polynomial time algorithm to identify functionally highly correlated biclusters. Our algorithm identifies (1) the gene set that follows additive, multiplicative, and combined patterns simultaneously that allow high level of noise, (2) the multiple, possibly overlapped, and diverse gene sets, (3) biclusters with negatively correlated as well as positively correlated gene set simultaneously, and (4) gene sets whose functional association is strongly high. We validated the level of functional association of our method, and compared with current methods using GO.
Keywords :
biology computing; cellular biophysics; computational complexity; data mining; genetics; molecular biophysics; pattern clustering; RN-Cluster; cellular process; coherent bicluster discovery; gene subset; negatively correlated gene set; polynomial time algorithm; positively correlated gene set; Additive noise; Approximation algorithms; Bioinformatics; Clustering algorithms; Computer science; Gene expression; Information technology; Multi-stage noise shaping; Noise level; Noise robustness; Biclustering; Co-clustering; Data mining; Gene expression data analysis; Knowledge discovery; Microarray analysis; Noise;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Biocomputation, Bioinformatics, and Biomedical Technologies, 2008. BIOTECHNO '08. International Conference on
Conference_Location :
Bucharest
Print_ISBN :
978-0-7695-3191-5
Electronic_ISBN :
978-0-7695-3191-5
Type :
conf
DOI :
10.1109/BIOTECHNO.2008.8
Filename :
4561147
Link To Document :
بازگشت