Title :
Structural genomic workflows supported by Web services
Author :
Cavalcanti, Maria Cláudia ; Baião, Fernanda ; Rössle, Shaila C. ; Bisch, Paulo M. ; Targino, Rafael ; Pires, Paulo F. ; Campos, Maria Luiza ; Mattoso, Marta
Author_Institution :
Fed. Univ. of Rio de Janeiro, Brazil
Abstract :
In silico experiments encompass multiple combinations of program and data resources, which are complex to be managed. Typically, script languages are used due to their ease of use, despite their specifity and difficulty of reuse. In contrast, Web service technology was specially conceived to encapsulate and combine programs and data, providing interoperability, scalability and flexibility issues. We have combined metadata support with Web services within a framework that supports scientific workflows. We have experimented this framework with a real structural genomic workflow, showing its viability and evidencing its advantages.
Keywords :
Internet; biology computing; database management systems; meta data; semantic Web; workflow management software; Web services; data encapsulation; data resources; in silico experiments; metadata support; program combination; script languages; structural genomic workflows; Bioinformatics; Biological information theory; Genomics; HTML; In vitro; Laboratories; Packaging; Resource management; Scalability; Web services;
Conference_Titel :
Database and Expert Systems Applications, 2003. Proceedings. 14th International Workshop on
Print_ISBN :
0-7695-1993-8
DOI :
10.1109/DEXA.2003.1231996