• DocumentCode
    2096387
  • Title

    Multiple equilibria in SSN metabolic module

  • Author

    Lei Hong-Bo ; Zhang Ji-feng ; Chen Luonan

  • Author_Institution
    Key Lab. of Syst. & Control, Chinese Acad. of Sci., Beijing, China
  • fYear
    2010
  • fDate
    29-31 July 2010
  • Firstpage
    6256
  • Lastpage
    6261
  • Abstract
    In this paper, a novel modeling framework based on network modularization decomposition is proposed to analyze the multi-stability of metabolic networks. We first decompose a metabolic network into four types of elementary modules according to the special structures of metabolic systems, and then focus on one key type of these modules-the single substrate and single product with no inhibition (SSN) module, by deriving a nonlinear ordinary differential equation (ODE) model based on the Hill kinetics. We show that the injectivity of the vector field of the ODE model is equivalent to the nonsingularity of the Jacobian matrix of this vector field, which enables us equivalently to convert an unverifiable sufficient condition on the absence of multiple equilibria of an SSN module into a verifiable one. Moreover, we prove that this sufficient condition is held when the SSN module has both input and output nodes. Such a theoretical result not only provides a general framework for modeling an SSN metabolic module, but also implies that if a biological system can be exactly modeled by an SSN module, then it cannot admit multiple equilibria (or steady states).
  • Keywords
    Jacobian matrices; biochemistry; catalysis; enzymes; molecular biophysics; nonlinear differential equations; reaction kinetics theory; Hill kinetics; Jacobian matrix nonsingularity; ODE model; SSN metabolic module; enzyme-catalyzed reactions; metabolic networks; multiple equilibria; multistability; network modularization decomposition; nonlinear ordinary differential equation model; vector field; Analytical models; Biochemistry; Biological system modeling; Jacobian matrices; Kinetic theory; Mathematical model; Tin; Metabolic Network; Multiple Equilibria; SSN Module;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Control Conference (CCC), 2010 29th Chinese
  • Conference_Location
    Beijing
  • Print_ISBN
    978-1-4244-6263-6
  • Type

    conf

  • Filename
    5573012