DocumentCode
2099306
Title
Bio-array image processing and genetic networks modelling
Author
Demongeot, J. ; Berger, F. ; Baum, T.P. ; Thuderoz, F. ; Cohen, O.
Author_Institution
Fac. of Medicine, CNRS, La Tronche, France
fYear
2002
fDate
15-23 June 2002
Abstract
The new tools available for gene expression studies are essentially the bio-array methods using a large variety of physical detectors (isotopes, fluorescent markers, ultrasounds). Here we present an image processing method independent of the detector type, dealing with the noise and with the peaks overlapping, the peaks revealing the detector activity (isotopic in the presented example), correlated with the gene expression. After this first step of image processing, we can extract information about causal influence (activation or inhibition) a gene can exert on other genes, leading to clusters of co-expression in which we extract an interaction matrix explaining the dynamics of co-expression correlated to the studied tissue function.
Keywords
biological tissues; cellular biophysics; genetics; medical image processing; bio-array image processing; detector activity; fluorescent markers; gene expression; genetic networks modelling; isotopes; tissue function; Biomedical imaging; Data mining; Detectors; Gene expression; Genetics; Image processing; Image segmentation; Isotopes; Noise figure; Testing;
fLanguage
English
Publisher
ieee
Conference_Titel
Biomedical Imaging, 2002. 5th IEEE EMBS International Summer School on
Print_ISBN
0-7803-7507-6
Type
conf
DOI
10.1109/SSBI.2002.1234001
Filename
1234001
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