• DocumentCode
    2184845
  • Title

    Volumetric constraints in 3D tomography applied to electron microscopy

  • Author

    Marabini, R. ; Herman, G.T. ; Sorzano, C.O.S. ; Carazo, J.M.

  • Author_Institution
    Graduate Center, City Univ. of New York, NY, USA
  • fYear
    2002
  • fDate
    2002
  • Firstpage
    641
  • Lastpage
    644
  • Abstract
    3D electron microscopy aims at the reconstruction of density volumes corresponding to the mass distribution of macromolecules imaged with an electron microscope. There are many factors limiting the resolution achievable when this technique is applied to biomolecules: microscope transfer function, molecule flexibility, lack of projections from certain directions, unknown angular distribution, image noise, etc. In this communication we propose the use of a priori information such as particle symmetry, occupied volume, known surface, density nonnegativity and similarity to a known volume in order to improve the quality of the reconstruction. When a series expansion of the reconstructed volume is done, all these constraints are expressed as a set of equations which the expansion coefficients must satisfy. In this work, this equation set is specified and the effect of each one on the reconstruction of a realistic phantom is explored.
  • Keywords
    biological techniques; biology computing; computerised tomography; electron microscopy; image reconstruction; image resolution; molecular biophysics; phantoms; proteins; series (mathematics); 3D tomography; ART with blobs; a priori information; bacteriorhodopsin; biomolecules; density; density volume reconstruction; electron microscopy; equation set; expansion coefficients; image noise; known surface; lack of projections; macromolecules; mass distribution; microscope transfer function; molecule flexibility; nonnegativity; occupied volume; particle symmetry; protein; realistic phantom; reconstruction quality; resolution; series expansion; similarity; unknown angular distribution; volumetric constraints; Atomic force microscopy; Electron microscopy; Equations; Image reconstruction; Image resolution; Matrix converters; Molecular biophysics; Subspace constraints; Surface reconstruction; Transfer functions;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Imaging, 2002. Proceedings. 2002 IEEE International Symposium on
  • Print_ISBN
    0-7803-7584-X
  • Type

    conf

  • DOI
    10.1109/ISBI.2002.1029339
  • Filename
    1029339