DocumentCode :
2188604
Title :
Feature Selection of Gene Expression Data Using Regression Model
Author :
Shon, Ho Sun ; Ryu, Kenu Ho ; Yang, Kyung-Sook
Author_Institution :
Database/.Bioinf. Lab., Chungbuk Nat. Univ., Cheongju, South Korea
fYear :
2010
fDate :
June 29 2010-July 1 2010
Firstpage :
1442
Lastpage :
1447
Abstract :
There have been a lot of researches that demonstrate the phenomenon of life or the origin of the disease and classify or diagnose the state of the cell. These are usually achieved by the strength of the gene expression under certain circumstances by the microarray which can observe tens and thousands of gene expression profile. It is not feasible to use all the attributes because a lots of gene expression data are involved in microarray experiments. Therefore, in order to select the significant genes from lots of data, we applied the hybrid method combining filter method with LASSO model. As experimental data set, leukemia data are applied to a number of classifiers such as naïve Bayesian, SVM, Bayesian network, logistic regression and random forest. In the experimental result, we found that the gene selection method using the LASSO outperforms the existing gene selection method.
Keywords :
Bayes methods; diseases; genetics; medical computing; pattern classification; regression analysis; support vector machines; Bayesian network; LASSO model; SVM; cell state diagnosis; classifier; disease; feature selection; filter method; gene expression profile; gene selection method; leukemia data; logistic regression; microarray experiments; naive Bayesian; random forest; regression model; Bayesian methods; Classification algorithms; Data models; Gene expression; Mathematical model; Predictive models; Sensitivity;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Computer and Information Technology (CIT), 2010 IEEE 10th International Conference on
Conference_Location :
Bradford
Print_ISBN :
978-1-4244-7547-6
Type :
conf
DOI :
10.1109/CIT.2010.258
Filename :
5577830
Link To Document :
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