Title :
A case study of instant workbench for InterProScan by Knoppix high throughput computing edition
Author :
Konishi, F. ; Ohki, Shigehisa ; Hamano, Yuichiro ; Ishii, M.
Author_Institution :
RIKEN GSC, Adv. Genome Inf. Technol. Res. Group, Japan
Abstract :
We have developed an instant environment for protein sequence profile scanning application by re-mastering Knoppix distribution as high throughput computing edition. This is an integrated environment with bioinformatics applications, parallel file system and scheduler. The integrated environment allows biology researchers to perform scanning applications immediately on their computational pool without any system configuration changed.
Keywords :
Linux; biology computing; parallel databases; proteins; scheduling; scientific information systems; sequences; InterProScan; Knoppix distribution; bioinformatics applications; biology research; high throughput computing; integrated environment; parallel file system; protein sequence profile scanning application; scheduling; Bioinformatics; Biology computing; Computer aided software engineering; Databases; File systems; Genomics; Processor scheduling; Proteins; Sequences; Throughput;
Conference_Titel :
High Performance Distributed Computing, 2005. HPDC-14. Proceedings. 14th IEEE International Symposium on
Print_ISBN :
0-7803-9037-7
DOI :
10.1109/HPDC.2005.1520985
