DocumentCode
2224698
Title
A case study of instant workbench for InterProScan by Knoppix high throughput computing edition
Author
Konishi, F. ; Ohki, Shigehisa ; Hamano, Yuichiro ; Ishii, M.
Author_Institution
RIKEN GSC, Adv. Genome Inf. Technol. Res. Group, Japan
fYear
2005
fDate
24-27 July 2005
Firstpage
301
Lastpage
302
Abstract
We have developed an instant environment for protein sequence profile scanning application by re-mastering Knoppix distribution as high throughput computing edition. This is an integrated environment with bioinformatics applications, parallel file system and scheduler. The integrated environment allows biology researchers to perform scanning applications immediately on their computational pool without any system configuration changed.
Keywords
Linux; biology computing; parallel databases; proteins; scheduling; scientific information systems; sequences; InterProScan; Knoppix distribution; bioinformatics applications; biology research; high throughput computing; integrated environment; parallel file system; protein sequence profile scanning application; scheduling; Bioinformatics; Biology computing; Computer aided software engineering; Databases; File systems; Genomics; Processor scheduling; Proteins; Sequences; Throughput;
fLanguage
English
Publisher
ieee
Conference_Titel
High Performance Distributed Computing, 2005. HPDC-14. Proceedings. 14th IEEE International Symposium on
ISSN
1082-8907
Print_ISBN
0-7803-9037-7
Type
conf
DOI
10.1109/HPDC.2005.1520985
Filename
1520985
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