• DocumentCode
    2285375
  • Title

    cDNA microarray image analysis

  • Author

    Tozduman, Ersin ; Albayrak, Songül

  • Author_Institution
    Bilgisayar Muhendisligi Bolumu, Yildiz Teknik Univ., Istanbul, Turkey
  • fYear
    2009
  • fDate
    20-22 May 2009
  • Firstpage
    1
  • Lastpage
    4
  • Abstract
    cDNA microarray image analysis has grown very important these days because of the growing field which it´s part of: microarray expression analysis. In this work we propose a new cDNA microarray image analysis system. A cDNA microarray analysis system consists of three main parts which are gridding, segmentation and information extraction, respectively. In gridding stage we propose a new automated gridding technique which is based on mathematical morphology. For segmentation we propose two different algorithm which are based on K-Means clustering and Fuzzy C-Means clustering respectively. On the final stage, information extraction, our proposed system uses a classical approach which calculates background values locally. The proposed system has open parts in the way of developement and is still being worked on.
  • Keywords
    DNA; arrays; feature extraction; fuzzy control; grid computing; image segmentation; medical image processing; molecular biophysics; K-means clustering; automated gridding technique; cDNA microarray; fuzzy C-means clustering; image analysis; image information extraction; image segmentation; microarray expression analysis; Bioinformatics; Clustering algorithms; DNA; Data mining; Genomics; Image analysis; Image segmentation; Information analysis; Instruments; Morphology;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Engineering Meeting, 2009. BIYOMUT 2009. 14th National
  • Conference_Location
    Balcova, Izmir
  • Print_ISBN
    978-1-4244-3605-7
  • Electronic_ISBN
    978-1-4244-3606-4
  • Type

    conf

  • DOI
    10.1109/BIYOMUT.2009.5130308
  • Filename
    5130308