• DocumentCode
    2319696
  • Title

    Hybrid metaheuristic for multi-objective biclustering in microarray data

  • Author

    Seridi, Khedidja ; Jourdan, Laetitia ; Talbi, El-Ghazali

  • Author_Institution
    LIFL, INRIA Lille-Nord Eur., Villeneuve d´´Ascq, France
  • fYear
    2012
  • fDate
    9-12 May 2012
  • Firstpage
    222
  • Lastpage
    228
  • Abstract
    Biclustering is a well-known data mining problem in the field of gene expression data. It consists in extracting genes that behave similarly under some experimental conditions. As the Biclustering problem is NP-Complete in most of its variants, many heuristics and metaheuristics are defined to solve for it. Classical algorithms allow the extraction of some biclusters in reasonable time, however most of them remain time consuming. In this work, we propose a new hybrid multi-objective meta-heuristic H-MOBI based on NSGA-II (Non-dominated Sorting Genetic Algorithm II), CC (Cheng and Church) heuristic and a multi-objective local search PLS-1 (Pareto Local Search 1). Experimental results on real data sets show that our approach can find significant biclusters of high quality.
  • Keywords
    bioinformatics; biological techniques; computational complexity; data mining; genetic algorithms; genetics; molecular biophysics; search problems; CC heuristic; Cheng-Church heuristic; H-MOBI; NP-complete problem; NSGA-II; Nondominated Sorting Genetic Algorithm II; Pareto Local Search 1; bicluster extraction; data mining problem; gene expression data; hybrid multiobjective metaheuristic; microarray data; multiobjective biclustering; multiobjective local search PLS-1; Ferroelectric films; Nonvolatile memory; Random access memory; Biclustering; Microarray data; Multi-objective optimization;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Computational Intelligence in Bioinformatics and Computational Biology (CIBCB), 2012 IEEE Symposium on
  • Conference_Location
    San Diego, CA
  • Print_ISBN
    978-1-4673-1190-8
  • Type

    conf

  • DOI
    10.1109/CIBCB.2012.6217234
  • Filename
    6217234