DocumentCode
2341321
Title
Design of genetic switches with only positive feedback loops
Author
Kobayashi, Tetsuya ; Chen, Luonan ; Aihara, Kazuyuki
Author_Institution
Univ. of Tokyo, Japan
fYear
2002
fDate
2002
Firstpage
151
Lastpage
162
Abstract
We develop a new methodology to design synthetic genetic switch networks with multiple genes and time delays, by using monotone dynamical theory. We show that the networks with only positive feedback loops have no stable oscillation except equilibria whose stability is also independent of the time delays. Such systems have ideal properties for switch networks and can be designed without consideration of time delays, because the systems can be reduced from functional spaces to Euclidian spaces due to the independence to time delays. Specifically, we first prove the basic properties of the genetic networks composed of only positive feedback loops, and then propose a procedure to design the switches, which drastically simplifies analysis of the switches and makes theoretical analysis and designing tractable even for large scale systems. Finally, we demonstrate our theoretical results by designing a biologically plausible synthesized genetic switch with experimentally well investigated lacI, tetR, and cI genes.
Keywords
delays; feedback; genetics; stability; Euclidian spaces; cI genes; genetic switch design; genetic switch networks; lacI genes; large-scale systems; monotone dynamical theory; multiple genes; positive feedback loops; stable oscillation; tetR genes; time delays; Control system synthesis; Delay effects; Design methodology; Differential equations; Feedback loop; Genetics; Mathematical model; Network synthesis; Stability; Switches;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics Conference, 2002. Proceedings. IEEE Computer Society
Print_ISBN
0-7695-1653-X
Type
conf
DOI
10.1109/CSB.2002.1039338
Filename
1039338
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