• DocumentCode
    2341321
  • Title

    Design of genetic switches with only positive feedback loops

  • Author

    Kobayashi, Tetsuya ; Chen, Luonan ; Aihara, Kazuyuki

  • Author_Institution
    Univ. of Tokyo, Japan
  • fYear
    2002
  • fDate
    2002
  • Firstpage
    151
  • Lastpage
    162
  • Abstract
    We develop a new methodology to design synthetic genetic switch networks with multiple genes and time delays, by using monotone dynamical theory. We show that the networks with only positive feedback loops have no stable oscillation except equilibria whose stability is also independent of the time delays. Such systems have ideal properties for switch networks and can be designed without consideration of time delays, because the systems can be reduced from functional spaces to Euclidian spaces due to the independence to time delays. Specifically, we first prove the basic properties of the genetic networks composed of only positive feedback loops, and then propose a procedure to design the switches, which drastically simplifies analysis of the switches and makes theoretical analysis and designing tractable even for large scale systems. Finally, we demonstrate our theoretical results by designing a biologically plausible synthesized genetic switch with experimentally well investigated lacI, tetR, and cI genes.
  • Keywords
    delays; feedback; genetics; stability; Euclidian spaces; cI genes; genetic switch design; genetic switch networks; lacI genes; large-scale systems; monotone dynamical theory; multiple genes; positive feedback loops; stable oscillation; tetR genes; time delays; Control system synthesis; Delay effects; Design methodology; Differential equations; Feedback loop; Genetics; Mathematical model; Network synthesis; Stability; Switches;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics Conference, 2002. Proceedings. IEEE Computer Society
  • Print_ISBN
    0-7695-1653-X
  • Type

    conf

  • DOI
    10.1109/CSB.2002.1039338
  • Filename
    1039338