Title :
Constrained reduction mapping for a class of network models of genomic regulation
Author :
Ivanov, Ivan ; Vahedi, Golnaz ; Dougherty, Edward
Author_Institution :
Texas A&M Univ., College Station
Abstract :
Constructing network models of genomic regulation from data can help to better understand the manner in which genes interact in an integrative and holistic way within a given genome. One of the major impediments for the practical application of such models is their structural and computational complexity. Thus, it is sometimes necessary to construct computationally tractable sub-networks while still carrying sufficient structure for the application at hand. Hence, there is a need for size reducing mappings. This paper focuses on constrained reduction mappings for a particular class of network models that are inferred from non-temporal data. The constraints arise naturally from the structural and dynamical properties of the considered models.
Keywords :
biology computing; cellular biophysics; computational complexity; genetics; physiological models; computational complexity; constrained reduction mapping; genome; genomic regulation; network models; structural complexity; Bioinformatics; Biological system modeling; Biomedical signal processing; Computational complexity; Genomics; Impedance; Optimal control; Physiology; Predictive models; Signal processing algorithms;
Conference_Titel :
Life Science Systems and Applications Workshop, 2007. LISA 2007. IEEE/NIH
Conference_Location :
Bethesda, MD
Print_ISBN :
978-1-4244-1813-8
Electronic_ISBN :
978-1-4244-1813-8
DOI :
10.1109/LSSA.2007.4400917