• DocumentCode
    2379093
  • Title

    Prediction of coding region in the DNA sequences

  • Author

    Jleed, Hitham ; Agaian, Sos

  • Author_Institution
    Dept. of Electr. & Comput. Eng., Univ. of Texas at San Antonio, San Antonio, TX, USA
  • fYear
    2011
  • fDate
    9-12 Oct. 2011
  • Firstpage
    1128
  • Lastpage
    1133
  • Abstract
    In this paper, we propose a new algorithm based on Fourier spectral characteristics. This technique improves the coding prediction accuracy, boosting the protein coding region and suppressing the non-coding region within the DNA sequences. We also compare this algorithm using computer simulation with commonly used techniques showing that our technique for exon region prediction provides superior properties for the separation of exon and intron regions.
  • Keywords
    DNA; Fourier transform spectra; biology computing; encoding; proteins; DNA sequences; Fourier spectral characteristics; coding region prediction; computer simulation; exon region prediction; intron regions; protein coding region; DNA; Digital filters; Discrete Fourier transforms; Encoding; Prediction algorithms; Proteins; DNA; Discrete Fourier transforms; Receiver operating characteristic; indicator sequence;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Systems, Man, and Cybernetics (SMC), 2011 IEEE International Conference on
  • Conference_Location
    Anchorage, AK
  • ISSN
    1062-922X
  • Print_ISBN
    978-1-4577-0652-3
  • Type

    conf

  • DOI
    10.1109/ICSMC.2011.6083826
  • Filename
    6083826