Title :
A genomic datawarehouse model for fast manipulation using repeat region
Author :
Rhie, Arang ; Lee, Kyungeun ; Park, Hyun-Seok
Author_Institution :
Bioinf. Lab., Ewha Womans Univ., Seoul, South Korea
Abstract :
By taking the fact that human genome consists of more than 35% of repetitive sequence, we present a data warehouse model that is efficient for nucleotide sequence based analysis. Roman´s algorithm has been adapted in order to find repeat regions and these repeats are modeled into snowflake schemas for fast storing and querying results.
Keywords :
bioinformatics; genomics; Roman´s algorithm; fast manipulation; genomic data warehouse model; nucleotide sequence; repeat region; snowflake schemas; datawarehouse model; repeat region; repeatative sequence; snowflake schema;
Conference_Titel :
Bioinformatics and Biomedicine Workshops (BIBMW), 2010 IEEE International Conference on
Conference_Location :
Hong, Kong
Print_ISBN :
978-1-4244-8303-7
Electronic_ISBN :
978-1-4244-8304-4
DOI :
10.1109/BIBMW.2010.5703950
