• DocumentCode
    2388318
  • Title

    Dynamics in the Folding of Long DNA Chain under Strong Flow

  • Author

    Saito, Takuya ; Sakaue, Takahiro ; Kaneko, Daiji ; Washizu, Masao ; Oana, Hidehiro

  • Author_Institution
    Dept. of Mech. Eng., Univ. of Tokyo, Tokyo
  • fYear
    2008
  • fDate
    6-9 Nov. 2008
  • Firstpage
    118
  • Lastpage
    123
  • Abstract
    This paper presents the study about the dynamics in the folding of long DNA under strong flow. Direct observation of the folding process of the tethered DNA molecule induced by adding a condensing agent is demonstrated using a microfluidic device, and this theoretical interpretation of the process is provided. From the direct observation, it is found that the folding dynamics typically exhibits characteristic three stages: (i) initial rapid compaction, (ii) slowing-down, (iii) sudden speed-up. Such a notable feature pin-points a nonequilibrium flow effect and can be interpreted by a simple theory, which takes account of the nonuniformity of the tethered chain stretched by flow.
  • Keywords
    DNA; biocomputing; genomics; microfluidics; molecular biophysics; DNA chain under strong flow; folding process; genomic DNA; microfluidic device; tethered DNA molecule; Bioinformatics; Biomedical engineering; Chemistry; Coils; Compaction; DNA; Genomics; Hydrodynamics; Mechanical engineering; Microfluidics;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Micro-NanoMechatronics and Human Science, 2008. MHS 2008. International Symposium on
  • Conference_Location
    Nagoya
  • Print_ISBN
    978-1-4244-2918-9
  • Electronic_ISBN
    978-1-4244-2919-6
  • Type

    conf

  • DOI
    10.1109/MHS.2008.4752434
  • Filename
    4752434