• DocumentCode
    2395326
  • Title

    Multilevel modeling in human microarray time course gene expression data

  • Author

    Ghaderi-Zefrehei, Mostafa ; Memari, Hamid Rajabi ; Kadkhodaei, Saied

  • Author_Institution
    Dept. of Animal Sci., Univ. of Yasouj, Yasouj, Iran
  • fYear
    2010
  • fDate
    3-4 Nov. 2010
  • Firstpage
    1
  • Lastpage
    5
  • Abstract
    In this study different numbers of models were learned over a single dataset of human microarray time-course gene expression data. The idea of running this extensive broad of modeling was lack of true knowledge of variance covariance of error structure among gene expression vales due time. The results indicated that it is difficult to find the right and sufficiently accurate variance covariance among gene expression data which defines the expression values the best. Also, the results indicated that there is less small negative correlation between intercept and slop among expression values within genes. This generally indicates those genes which get started with high expression values, likely decreases their expression across times. The analysis suggested that multilevel modeling can likely pinpoint to differentially expressed genes across whole dataset. As a side it concluded that by using multilevel modeling, genes which show periodic activity across time can be winnowed down too.
  • Keywords
    bioinformatics; covariance analysis; genetics; physiological models; time series; error structure; gene expression data; human microarray time course data; multilevel modeling; negative correlation; periodic activity; variance covariance; Analytical models; Computational modeling; Data models; Gene expression; Humans; Time measurement; Time series analysis; Human; Microarray; Multilevel Modeling; Time-course Data; component;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Biomedical Engineering (ICBME), 2010 17th Iranian Conference of
  • Conference_Location
    Isfahan
  • Print_ISBN
    978-1-4244-7483-7
  • Type

    conf

  • DOI
    10.1109/ICBME.2010.5705026
  • Filename
    5705026