DocumentCode :
2399905
Title :
Using projection and 2D plots to visually reveal genetic mechanisms of complex human disorders
Author :
Nouanesengsy, Boonthanome ; Seok, Sang-Cheol ; Shen, Han-Wei ; Vieland, Veronica J.
Author_Institution :
Battelle Center for Math. Med., Ohio State Univ., Columbus, OH, USA
fYear :
2009
fDate :
12-13 Oct. 2009
Firstpage :
171
Lastpage :
178
Abstract :
Gene mapping is a statistical method used to localize human disease genes to particular regions of the human genome. When performing such analysis, a genetic likelihood space is generated and sampled, which results in a multidimensional scalar field. Researchers are interested in exploring this likelihood space through the use of visualization. Previous efforts at visualizing this space, though, were slow and cumbersome, only showing a small portion of the space at a time, thus requiring the user to keep a mental picture of several views. We have developed a new technique that displays much more data at once by projecting the multidimensional data into several 2D plots. One plot is created for each parameter that shows the change along that parameter. A radial projection is used to create another plot that provides an overview of the high dimensional surface from the perspective of a single point. Linking and brushing between all the plots are used to determine relationships between parameters. We demonstrate our techniques on real world autism data, showing how to visually examine features of the high dimensional space.
Keywords :
data visualisation; diseases; genetics; medical computing; statistical analysis; 2D plots; complex human disorders; gene mapping; genetic likelihood space; genetic mechanism visualization; human disease genes; human genome; multidimensional data projection; multidimensional scalar field; radial projection; statistical method; Bioinformatics; Data visualization; Diseases; Genetics; Genomics; Humans; Multidimensional systems; Performance analysis; Space exploration; Statistical analysis; Autism; LD analysis; Linkage Analysis; Linkage disequilibrium; Multidimensional data; PPL; PPLD; Posterior Probability of Linkage; Visualization;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Visual Analytics Science and Technology, 2009. VAST 2009. IEEE Symposium on
Conference_Location :
Atlantic City, NJ
Print_ISBN :
978-1-4244-5283-5
Type :
conf
DOI :
10.1109/VAST.2009.5333917
Filename :
5333917
Link To Document :
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