• DocumentCode
    2412927
  • Title

    CAMBer: An approach to support comparative analysis of multiple bacterial strains

  • Author

    Wozniak, Michal ; Wong, Limsoon ; Tiuryn, Jerzy

  • Author_Institution
    Fac. of Math., Univ. of Warsaw, Warsaw, Poland
  • fYear
    2010
  • fDate
    18-21 Dec. 2010
  • Firstpage
    121
  • Lastpage
    126
  • Abstract
    There is a large amount of inconsistency in gene structure annotations of bacterial strains. This inconsistency is a frustrating impedance to effective comparative genomic analysis of bacterial strains in promising applications such as gaining insights into bacterial drug resistance. Here, we propose CAMBer as an approach to support comparative analysis of multiple bacterial strains. CAMBer produces what we called multigene families. Each multigene family reveals genes that are in one-to-one correspondence in the bacterial strains, thereby permitting their annotations to be integrated. As a result, more accurate and more comprehensive annotations of the bacterial strains can be produced.
  • Keywords
    bioinformatics; genomics; microorganisms; molecular configurations; pattern classification; CAMBer; bacterial drug resistance; bacterial strains; gene structure annotations; multigene family; multiple strain comparative genomic analysis; Bioinformatics; Databases; Genomics; Immune system; Joining processes; Microorganisms; Strain; annotations; comparative genomics; genomes; my-cobacterium tuberculosis;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Bioinformatics and Biomedicine (BIBM), 2010 IEEE International Conference on
  • Conference_Location
    Hong Kong
  • Print_ISBN
    978-1-4244-8306-8
  • Electronic_ISBN
    978-1-4244-8307-5
  • Type

    conf

  • DOI
    10.1109/BIBM.2010.5706549
  • Filename
    5706549