DocumentCode
2412927
Title
CAMBer: An approach to support comparative analysis of multiple bacterial strains
Author
Wozniak, Michal ; Wong, Limsoon ; Tiuryn, Jerzy
Author_Institution
Fac. of Math., Univ. of Warsaw, Warsaw, Poland
fYear
2010
fDate
18-21 Dec. 2010
Firstpage
121
Lastpage
126
Abstract
There is a large amount of inconsistency in gene structure annotations of bacterial strains. This inconsistency is a frustrating impedance to effective comparative genomic analysis of bacterial strains in promising applications such as gaining insights into bacterial drug resistance. Here, we propose CAMBer as an approach to support comparative analysis of multiple bacterial strains. CAMBer produces what we called multigene families. Each multigene family reveals genes that are in one-to-one correspondence in the bacterial strains, thereby permitting their annotations to be integrated. As a result, more accurate and more comprehensive annotations of the bacterial strains can be produced.
Keywords
bioinformatics; genomics; microorganisms; molecular configurations; pattern classification; CAMBer; bacterial drug resistance; bacterial strains; gene structure annotations; multigene family; multiple strain comparative genomic analysis; Bioinformatics; Databases; Genomics; Immune system; Joining processes; Microorganisms; Strain; annotations; comparative genomics; genomes; my-cobacterium tuberculosis;
fLanguage
English
Publisher
ieee
Conference_Titel
Bioinformatics and Biomedicine (BIBM), 2010 IEEE International Conference on
Conference_Location
Hong Kong
Print_ISBN
978-1-4244-8306-8
Electronic_ISBN
978-1-4244-8307-5
Type
conf
DOI
10.1109/BIBM.2010.5706549
Filename
5706549
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