• DocumentCode
    242816
  • Title

    GenApp Module Execution and Airavata Integration

  • Author

    Brookes, Emre H. ; Anjum, Nadeem ; Curtis, Joseph E. ; Marru, Suresh ; Singh, Raminder ; Pierce, Marlon

  • Author_Institution
    Dept. of Biochem., Univ. of Texas Health Sci. Centrer, San Antonio, TX, USA
  • fYear
    2014
  • fDate
    21-21 Nov. 2014
  • Firstpage
    9
  • Lastpage
    12
  • Abstract
    A new framework (GenApp) for rapid generation of scientific applications running on a variety of systems including science gateways has recently been developed. This framework builds a user interface for a variety of target environments on a collection of executable modules. The method for execution of the modules is unrestricted by the framework. Initial implementation supports direct execution, and not queue managed submission, on a user´s workstation, a web server, or a compute resource accessible from the web server. After a successful workshop, it was discovered that long running jobs would sometimes fail, due to the loss of a TCP connection. This precipitated an improvement to the execution method with the bonus of easily allowing multiple web clients to attach to the running job. Finally, to support a diversity of queue managed compute resources, a Google Summer of Code project was completed to integrate the Apache Airavata middleware as an additional execution model within the GenApp framework.
  • Keywords
    Internet; biology computing; chemistry computing; computer network management; distributed processing; internetworking; middleware; public domain software; queueing theory; Apache Airavata middleware integration; GenApp module execution; Google Summer of Code project; Web server; queue managed compute resources; science gateways; scientific applications; user interface; user workstation; Conferences; Logic gates;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Gateway Computing Environments Workshop (GCE), 2014 9th
  • Conference_Location
    New Orleans, LA
  • Type

    conf

  • DOI
    10.1109/GCE.2014.12
  • Filename
    7021841