• DocumentCode
    2442068
  • Title

    Direct self-consistent field computations on GPU clusters

  • Author

    Shi, Guochun ; Kindratenko, Volodymyr ; Ufimtsev, Ivan ; Martinez, Todd

  • Author_Institution
    Nat. Center for Supercomput. Applic., Univ. of Illinois at Urbana-Champaign, Urbana, IL, USA
  • fYear
    2010
  • fDate
    19-23 April 2010
  • Firstpage
    1
  • Lastpage
    8
  • Abstract
    We present an implementation of one of the direct self-consistent-field (DSCF) calculation techniques, the restricted Hartree-Fock method, on a high-performance computing cluster outfitted with graphics processing units (GPUs) and demonstrate its effectiveness and scalability up to 128 cluster nodes on molecules of as many as 1,732 atoms. We discuss the overall parallel application architecture that relies on message passing interface for distributing workload among GPU cluster nodes and POSIX threads to manage the use of GPUs internal to each node. This approach of combining coarse and fine-grain parallelism on a distributed memory system allows to perform DSCF calculations on molecules that up until now have been unattainable due to the excessive computational requirements.
  • Keywords
    HF calculations; Unix; application program interfaces; chemistry computing; distributed memory systems; message passing; parallel architectures; workstation clusters; GPU clusters; POSIX; coarse grain parallelism; direct self-consistent field computations; distributed memory system; distributing workload; fine grain parallelism; graphics processing units; high-performance computing cluster; message passing interface; parallel application architecture; restricted Hartree-Fock method; Central Processing Unit; Chemicals; Chemistry; Computer architecture; Distributed computing; Graphics; Hardware; Nuclear electronics; Potential energy; Proteins; GPU; restricted Hartree-Fock;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Parallel & Distributed Processing (IPDPS), 2010 IEEE International Symposium on
  • Conference_Location
    Atlanta, GA
  • ISSN
    1530-2075
  • Print_ISBN
    978-1-4244-6442-5
  • Type

    conf

  • DOI
    10.1109/IPDPS.2010.5470478
  • Filename
    5470478