Title :
Measuring properties of molecular surfaces using ray casting
Author :
Phillips, Mike ; Georgiev, Iliyan ; Dehof, Anna Katharina ; Nickels, Stefan ; Marsalek, Lukas ; Lenhof, Hans-Peter ; Hildebrandt, Andreas ; Slusallek, Philipp
Author_Institution :
DFKI Saarbrucken, Saarbrucken, Germany
Abstract :
Molecular geometric properties, such as volume, exposed surface area, and occurrence of internal cavities, are important inputs to many applications in molecular modeling. In this work we describe a very general and highly efficient approach for the accurate computation of such properties, which is applicable to arbitrary molecular surface models. The technique relies on a high performance ray casting framework that can be easily adapted to the computation of further quantities of interest at interactive speed, even for huge models.
Keywords :
biology computing; molecular biophysics; ray tracing; internal cavities; molecular geometric properties; molecular modeling; molecular surface models; molecular surfaces; ray casting; Application software; Area measurement; Bioinformatics; Casting; Computer graphics; Molecular biophysics; Shape; Solid modeling; Solvents; Volume measurement; ray tracing; surface area; volume;
Conference_Titel :
Parallel & Distributed Processing, Workshops and Phd Forum (IPDPSW), 2010 IEEE International Symposium on
Conference_Location :
Atlanta, GA
Print_ISBN :
978-1-4244-6533-0
DOI :
10.1109/IPDPSW.2010.5470898