• DocumentCode
    2467430
  • Title

    A new support vector machine for microarray classification and adaptive gene selection

  • Author

    Li, Juntao ; Jia, Yingmin ; Du, Junping ; Yu, Fashan

  • Author_Institution
    Seventh Res. Div., Beihang Univ. (BUAA), Beijing, China
  • fYear
    2009
  • fDate
    10-12 June 2009
  • Firstpage
    5410
  • Lastpage
    5415
  • Abstract
    This paper presents a new support vector machine for simultaneous gene selection and microarray classification. By introducing the adaptive elastic net penalty which is a convex combination of weighted 1-norm penalty and weighted 2-norm penalty, the proposed support vector machine can encourage an adaptive grouping effect and reduce the shrinkage bias for the large coefficients. According to a reasonable correlation between the two regularization parameters, the optimal coefficient paths are shown to be piecewise linear and the corresponding solving algorithm is developed. Experiments are performed on leukaemia data that verify the research results.
  • Keywords
    biology computing; genetics; pattern classification; piecewise linear techniques; support vector machines; adaptive elastic net penalty; adaptive gene selection; microarray gene classification; optimal coefficient path; piecewise linear; support vector machine; weighted 1-norm penalty; weighted 2-norm penalty; Adaptive control; Cancer; Cardiac disease; Gene expression; Genomics; Input variables; Piecewise linear techniques; Programmable control; Support vector machine classification; Support vector machines; Gene selection; grouping effect; microarray classification; solution path; support vector machine (SVM);
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    American Control Conference, 2009. ACC '09.
  • Conference_Location
    St. Louis, MO
  • ISSN
    0743-1619
  • Print_ISBN
    978-1-4244-4523-3
  • Electronic_ISBN
    0743-1619
  • Type

    conf

  • DOI
    10.1109/ACC.2009.5160235
  • Filename
    5160235