DocumentCode
2467430
Title
A new support vector machine for microarray classification and adaptive gene selection
Author
Li, Juntao ; Jia, Yingmin ; Du, Junping ; Yu, Fashan
Author_Institution
Seventh Res. Div., Beihang Univ. (BUAA), Beijing, China
fYear
2009
fDate
10-12 June 2009
Firstpage
5410
Lastpage
5415
Abstract
This paper presents a new support vector machine for simultaneous gene selection and microarray classification. By introducing the adaptive elastic net penalty which is a convex combination of weighted 1-norm penalty and weighted 2-norm penalty, the proposed support vector machine can encourage an adaptive grouping effect and reduce the shrinkage bias for the large coefficients. According to a reasonable correlation between the two regularization parameters, the optimal coefficient paths are shown to be piecewise linear and the corresponding solving algorithm is developed. Experiments are performed on leukaemia data that verify the research results.
Keywords
biology computing; genetics; pattern classification; piecewise linear techniques; support vector machines; adaptive elastic net penalty; adaptive gene selection; microarray gene classification; optimal coefficient path; piecewise linear; support vector machine; weighted 1-norm penalty; weighted 2-norm penalty; Adaptive control; Cancer; Cardiac disease; Gene expression; Genomics; Input variables; Piecewise linear techniques; Programmable control; Support vector machine classification; Support vector machines; Gene selection; grouping effect; microarray classification; solution path; support vector machine (SVM);
fLanguage
English
Publisher
ieee
Conference_Titel
American Control Conference, 2009. ACC '09.
Conference_Location
St. Louis, MO
ISSN
0743-1619
Print_ISBN
978-1-4244-4523-3
Electronic_ISBN
0743-1619
Type
conf
DOI
10.1109/ACC.2009.5160235
Filename
5160235
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