DocumentCode
2492522
Title
A comprehensive comparison of ML algorithms for gene expression data classification
Author
De Souza, Bruno Feres ; de Carvalho, André C P L P ; Soares, Carlos
Author_Institution
ICMC, Univ. of Sao Paulo, São Carlos, Brazil
fYear
2010
fDate
18-23 July 2010
Firstpage
1
Lastpage
8
Abstract
Nowadays, microarray has become a fairly common tool for simultaneously inspecting the behavior of thousands of genes. Researchers have employed this technique to understand various biological phenomena. One straightforward use of such technology is identifying the class membership of the tissue samples based on their gene expression profiles. This task has been handled by a number of computational methods. In this paper, we provide a comprehensive evaluation of 7 commonly used algorithms over 65 publicly available gene expression datasets. The focus of the study was on comparing the performance of the algorithms in an efficient and sound manner, supporting the prospective users on how to proceed to choose the most adequate classification approach according to their investigation goals.
Keywords
biology computing; data handling; learning (artificial intelligence); pattern classification; ML algorithms; biological phenomena; gene expression data classification; gene expression datasets; machine learning; Bioinformatics; Genomics; Radio frequency;
fLanguage
English
Publisher
ieee
Conference_Titel
Neural Networks (IJCNN), The 2010 International Joint Conference on
Conference_Location
Barcelona
ISSN
1098-7576
Print_ISBN
978-1-4244-6916-1
Type
conf
DOI
10.1109/IJCNN.2010.5596651
Filename
5596651
Link To Document