• DocumentCode
    2492522
  • Title

    A comprehensive comparison of ML algorithms for gene expression data classification

  • Author

    De Souza, Bruno Feres ; de Carvalho, André C P L P ; Soares, Carlos

  • Author_Institution
    ICMC, Univ. of Sao Paulo, São Carlos, Brazil
  • fYear
    2010
  • fDate
    18-23 July 2010
  • Firstpage
    1
  • Lastpage
    8
  • Abstract
    Nowadays, microarray has become a fairly common tool for simultaneously inspecting the behavior of thousands of genes. Researchers have employed this technique to understand various biological phenomena. One straightforward use of such technology is identifying the class membership of the tissue samples based on their gene expression profiles. This task has been handled by a number of computational methods. In this paper, we provide a comprehensive evaluation of 7 commonly used algorithms over 65 publicly available gene expression datasets. The focus of the study was on comparing the performance of the algorithms in an efficient and sound manner, supporting the prospective users on how to proceed to choose the most adequate classification approach according to their investigation goals.
  • Keywords
    biology computing; data handling; learning (artificial intelligence); pattern classification; ML algorithms; biological phenomena; gene expression data classification; gene expression datasets; machine learning; Bioinformatics; Genomics; Radio frequency;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Neural Networks (IJCNN), The 2010 International Joint Conference on
  • Conference_Location
    Barcelona
  • ISSN
    1098-7576
  • Print_ISBN
    978-1-4244-6916-1
  • Type

    conf

  • DOI
    10.1109/IJCNN.2010.5596651
  • Filename
    5596651