• DocumentCode
    2503439
  • Title

    DNA synthetic sequences generation using multiple competing Markov models

  • Author

    Pratas, Diogo ; Bastos, Carlos A C ; Pinho, Armando J. ; Neves, António J R ; Matos, Luís M O

  • Author_Institution
    Signal Process. Lab., Univ. of Aveiro, Aveiro, Portugal
  • fYear
    2011
  • fDate
    28-30 June 2011
  • Firstpage
    133
  • Lastpage
    136
  • Abstract
    The development and implementation of computational models to represent DNA sequences is a great challenge. Markov models, usually known as finite-context models, have been used for a long time in DNA compression. In a previous work, we have shown that finite-context modelling can also be used for sequence generation. Furthermore, it is known that DNA is better represented by multiple finite-context models. However, the previous generator only allowed a single finite-context model to be used for generating a certain sequence. In this paper, we present results regarding a synthetic DNA generator based on multiple competing finite-context models.
  • Keywords
    DNA; Markov processes; molecular biophysics; DNA compression; DNA synthetic sequences generation; Markov model; finite-context modelling; Context; Context modeling; DNA; Data models; Entropy; Generators; Markov processes; DNA entropy; Markov models; Statistical generator; synthetic sequences;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Statistical Signal Processing Workshop (SSP), 2011 IEEE
  • Conference_Location
    Nice
  • ISSN
    pending
  • Print_ISBN
    978-1-4577-0569-4
  • Type

    conf

  • DOI
    10.1109/SSP.2011.5967639
  • Filename
    5967639