DocumentCode :
2530951
Title :
Micro-repetitive Structure of Genomic Sequences and the Identification of Ancient Repeat Elements
Author :
Singh, Abanish ; Feschotte, Cedric ; Stojanovic, Nikola
Author_Institution :
Univ. of Texas at Arlington, Arlington
fYear :
2007
fDate :
2-4 Nov. 2007
Firstpage :
165
Lastpage :
171
Abstract :
For many years the attempts to identify functional elements in genomic sequences through motif over- representation have been problematic, as every procedure to isolate such motifs resulted in a very large number of candidates with highly significant p-values. In this paper we postulate that most of these elements originate in ancient transpositional activity, with copies becoming so broken over time that they cannot be recognized as such any more. We have written a software tool which efficiently locates possible ancient repeats and, while the nature of much of our findings in real genomic sequences have yet to be confirmed by further biological analysis, our test results on well understood data sets have been encouraging.
Keywords :
biology computing; molecular biophysics; molecular configurations; proteins; ancient repeat elements identification; ancient transpositional activity; genomic sequences; microrepetitive structure; p-values; software tool; Assembly; Bioinformatics; Biological cells; Computer science; DNA; Genomics; Humans; Proteins; Sequences; USA Councils;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Bioinformatics and Biomedicine, 2007. BIBM 2007. IEEE International Conference on
Conference_Location :
Fremont, CA
Print_ISBN :
978-0-7695-3031-4
Type :
conf
DOI :
10.1109/BIBM.2007.56
Filename :
4413051
Link To Document :
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