DocumentCode
2550550
Title
SABRE: A Tool for Stochastic Analysis of Biochemical Reaction Networks
Author
Didier, Frederic ; Henzinger, Thomas A. ; Mateescu, Maria ; Wolf, Verena
Author_Institution
Sch. of Comput. & Commun. Sci., EPFL, Lausanne, Switzerland
fYear
2010
fDate
15-18 Sept. 2010
Firstpage
193
Lastpage
194
Abstract
The importance of stochasticity within biological systems has been shown repeatedly during the last years and has raised the need for efficient stochastic tools. We present SABRE, a tool for stochastic analysis of biochemical reaction networks. SABRE implements fast adaptive uniformization, a direct numerical approximation algorithm for computing transient solutions of biochemical reaction networks. In addition to the stochastic analysis, SABRE may also conduct deterministic analysis.
Keywords
biochemistry; chemistry computing; numerical analysis; stochastic processes; SABRE; biochemical reaction networks; biological systems; fast adaptive uniformization; numerical approximation algorithm; stochastic analysis; Adaptation model; Analytical models; Biological system modeling; Computational modeling; Markov processes; Mathematical model; Markov chains; biochemical reaction networks; population models; systems biology; tool;
fLanguage
English
Publisher
ieee
Conference_Titel
Quantitative Evaluation of Systems (QEST), 2010 Seventh International Conference on the
Conference_Location
Williamsburg, VA
Print_ISBN
978-1-4244-8082-1
Type
conf
DOI
10.1109/QEST.2010.33
Filename
5600387
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