• DocumentCode
    2568521
  • Title

    Structural properties of hub proteins

  • Author

    Cukuroglu, Engin ; Ozkirimli, Elif ; Keskin, Ozlem

  • Author_Institution
    Center for Comput. Biol. & Bioinf., Koc Univ., Istanbul, Turkey
  • fYear
    2010
  • fDate
    20-22 April 2010
  • Firstpage
    194
  • Lastpage
    196
  • Abstract
    Protein-protein interaction networks are scale free networks with a few hub proteins that have many interaction partners in the network. In this work, we examined the flexibility of the hubs by using a structural perspective and compared date hubs, which bind their partners at different times, and party hubs, which bind their partners simultaneously, with non hub proteins. The flexibility of the proteins is evaluated using temperature factors. Party hubs are found to be more flexible than date hubs, which in turn are more flexible than non-hub proteins. These may explain how a hub interacts with its partners specifically.
  • Keywords
    complex networks; molecular biophysics; molecular configurations; proteins; hub flexibility; hub protein structural properties; interaction partners; protein-protein interaction networks; scale free networks; Amino acids; Bioinformatics; Biological processes; Cellular networks; Chemical engineering; Computational biology; Immune system; Joining processes; Protein engineering; Temperature;
  • fLanguage
    English
  • Publisher
    ieee
  • Conference_Titel
    Health Informatics and Bioinformatics (HIBIT), 2010 5th International Symposium on
  • Conference_Location
    Antalya
  • Print_ISBN
    978-1-4244-5968-1
  • Type

    conf

  • DOI
    10.1109/HIBIT.2010.5478881
  • Filename
    5478881