Title :
Applying the dual-tree complex DWT and double density DWT for mass spectrometry feature extraction and classification
Author :
Pham, Phuong ; Yu, Li ; Nguyen, Minh
Author_Institution :
Dept. of Electron. & Inf. Eng., Huazhong Univ. of Sci. & Technol., Wuhan, China
Abstract :
In this paper, we propose to use dual-tree complex and double density discrete wavelet transform for extracting mass spectrometry features. Two corresponding procedures are suggested for mass spectrometry classification. Several experiments are deployed on two types of MALDI-TOF mass spectra, including stable spectra and noisy spectra. The classification results show that our proposed procedures not only obtain better performance than previous methods but are robust-to-noise.
Keywords :
MALDI mass spectra; MALDI mass spectroscopy; discrete wavelet transforms; feature extraction; medical signal processing; molecular biophysics; proteins; signal classification; time of flight mass spectra; time of flight mass spectroscopy; MALDI-TOF mass spectra; double density discrete wavelet transform; dual-tree complex discrete wavelet transform; feature classification; feature extraction; mass spectrometry; noisy spectra; stable spectra; Cancer; Cyclic redundancy check; Data mining; Discrete wavelet transforms; Feature extraction; Gaussian noise; Ionization; Mass spectroscopy; Support vector machine classification; Support vector machines; double density discrete wavelet transform; dual-tree complex wavelet transform; feature extraction; mass spectrometry; support vector machine;
Conference_Titel :
Bioinformatics and Biomedical Technology (ICBBT), 2010 International Conference on
Conference_Location :
Chengdu
Print_ISBN :
978-1-4244-6775-4
DOI :
10.1109/ICBBT.2010.5478933