Title :
Particle swarm optimization-based support vector regression and Bayesian networks applied to the toxicity of organic compounds to tadpoles (Rana japonica)
Author :
Su, Qiang ; Lu, Wen-cong ; Liu, Xu ; Gu, Tian-hong ; Niu, Bing
Author_Institution :
Coll. of Mater. Sci. & Eng., Shanghai Univ., Shanghai, China
Abstract :
Particle swarm optimization (PSO) is a new optimization method with strong global search capability. In present work, PSO-support vector regression (SVR) model was proposed to predict the toxicity of organic compounds to tadpoles (Rana japonica), in which PSO was used to determine free parameters of SVR. These results showed that the prediction accuracy of PSO-SVR model is higher than those mode of MLR and PLS. Moreover, Bayesian networks (BNs) was adopted to describe the relationship between toxicity associated with molecular descriptors in this work. The result of BNs was considered to be reasonable.
Keywords :
belief networks; bioinformatics; least squares approximations; organic compounds; particle swarm optimisation; prediction theory; regression analysis; toxicology; zoology; Bayesian networks; MLR; PLS; Rana japonica; molecular descriptors; organic compounds; particle swarm optimization; prediction accuracy; strong global search capability; support vector regression; tadpoles; toxicity; Bayesian methods; Biological system modeling; Chemistry; Organic compounds; Predictive models; Support vector machines; Training; Bayesian networks; Particle swarm optimization; Rana japonica tadpoles; support vector regression; toxicity;
Conference_Titel :
Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-1-4244-9351-7
DOI :
10.1109/BMEI.2011.6098692