DocumentCode :
2591042
Title :
GenSAS — An online integrated genome sequence annotation pipeline
Author :
Lee, T. ; Peace, C. ; Jung, S. ; Zheng, P. ; Main, D. ; Cho, I.
Author_Institution :
Horticulture & Landscape Archit., Washington State Univ., Pullman, WA, USA
Volume :
4
fYear :
2011
fDate :
15-17 Oct. 2011
Firstpage :
1967
Lastpage :
1973
Abstract :
We present a Web-based genome sequence annotation tool called GenSAS, the Genome Sequence Annotation Server. Advances in DNA sequencing technology and Web technologies have significantly reduced the costs associated with sequencing an organism´s genome, including the operating costs of hardware and software. However, researchers need to use multiple annotation tools to increase the accuracy of the annotation results, and the labor cost of analyzing the sequence data is still high due to the non uniform input and output formats used in each tool. There are many individual web based tools available for gene annotation, but GenSAS is unique in that it offers a one-stop website with a single graphical interface for running multiple structural and functional annotation tools, visualization and manual curation of genome. GenSAS improves the overall performance by distributing the work between the server and client machine and supports a streamlined workflow that further simplifies the tasks and reduces the overall processing time.
Keywords :
DNA; Web sites; bioinformatics; data visualisation; genomics; graphical user interfaces; molecular biophysics; molecular configurations; DNA sequencing; GenSAS; Genome Sequence Annotation Server; Web-based genome sequence annotation tool; Website; client machine; functional annotation tools; graphical interface; manual curation; online integrated genome sequence annotation; server machine; structural annotation tools; visualization; Accuracy; Bioinformatics; Browsers; Databases; Genomics; Proteins; Servers; annotation; genome browser; genomics tool; sequencing; web application;
fLanguage :
English
Publisher :
ieee
Conference_Titel :
Biomedical Engineering and Informatics (BMEI), 2011 4th International Conference on
Conference_Location :
Shanghai
Print_ISBN :
978-1-4244-9351-7
Type :
conf
DOI :
10.1109/BMEI.2011.6098712
Filename :
6098712
Link To Document :
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