Using computational models for development of the three-dimensional visualization in molecular biology

Author

Muhamedyev, Ravil I. ; Daineko, Y. ; Bari, D. ; Mansharipova, Alma T.

Author_Institution

CSSE&T Dept., Int. IT Univ., Almaty, Kazakhstan

fYear

2014

fDate

15-17 Oct. 2014

Firstpage

1

Lastpage

4

Abstract

A method for three-dimensional visualization of molecular biology processes modeled by chemical kinetic equations is presented. To implement this visualization, the software in C# and a database of three-dimensional forms that model molecular complexes are developed. The quantitative parameters in this visualization scheme are determined from kinetic equations governing the participating components, so our visualization is not only qualitative but also quantitative. As a case study, it was visualized a mathematical model for mitochondria-dependent apoptosis (programmed cell death) proposed by Bagci et all [19].

Keywords

biology computing; data visualisation; C#; chemical kinetic equation; mitochondria-dependent apoptosi; molecular biology; molecular complexes; programmed cell death; three-dimensional visualization; Biological system modeling; Computational modeling; Equations; Kinetic theory; Mathematical model; Solid modeling; Visualization; apoptosis; cell biology; chemical kinetics; visualization;

fLanguage

English

Publisher

ieee

Conference_Titel

Application of Information and Communication Technologies (AICT), 2014 IEEE 8th International Conference on

Conference_Location

Astana

Print_ISBN

978-1-4799-4120-9

Type

conf

DOI

10.1109/ICAICT.2014.7036006

Filename

7036006